PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G125000.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 797aa    MW: 89172.2 Da    PI: 6.4802
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G125000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Manes.01G125000.3.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Manes.01G125000.3.p 215 --WNEKNQLLLGIRRA 228
                          ..8899999****997 PP

2Auxin_resp1201.9e-39253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Manes.01G125000.3.p 253 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                          79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-49111256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-21126227No hitNo description
PROSITE profilePS5086312.337127229IPR003340B3 DNA binding domain
SMARTSM010191.1E-23127229IPR003340B3 DNA binding domain
PfamPF023621.2E-21127228IPR003340B3 DNA binding domain
PfamPF065071.7E-34253336IPR010525Auxin response factor
SuperFamilySSF542773.63E-7685765No hitNo description
PfamPF023092.0E-7688775IPR033389AUX/IAA domain
PROSITE profilePS5174524.637691775IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MKLSTSGLGQ QGHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPMELGMPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLRRPWHPG PSSLHDNRDE AGNGLMWLRG GTGEQGLHSL NFQAVNMFPW  420
AQQRLDPALL GNDQSQWYQA MLATGLQNVG SGDPLRQQFM QFQQPFQYLQ QSSSHCPLLQ  480
LQQQHQAIQQ STSHNVLQAQ NQISTESLPQ HLLQQQHNNQ PDDHAQQQQQ HHNYHDALQI  540
QASTTPIQNM LGSLCAEGSG NLLDFTRNGQ STLSEQLPQQ SWVQKYAHLQ VNAFTNSLSL  600
PRPYPEKVPA MEPENCNLDA QNATNFGMNI DSSGLLLPTT LPRYTSSTVD ADVSSMPLGD  660
SGFQNSIYGG MQDSSEILPS TGQVDPPTPS RTFVKVYKSG SVGRSLDISR FSSYHQLREE  720
LAQMFGIEGK LENPHRSGWQ LVFVDRENDV LLLGDDPWEA FVNNVWYIKI LSPEDVQKMG  780
EQGLESLGPN VGQRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611635747388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074114.10.0PREDICTED: auxin response factor 8 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A067KWZ20.0A0A067KWZ2_JATCU; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8